PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10036753
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ZF-HD
Protein Properties Length: 219aa    MW: 23414.3 Da    PI: 8.8643
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10036753genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.65.3e-3273130359
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                   + YkeClkNhAa++Gg a+DGCgEf ps++++  ++++lkCaACgCHRnFHRre+++
  Lus10036753  73 VCSYKECLKNHAATMGGLALDGCGEFFPSPNSSpLDPTSLKCAACGCHRNFHRREPSS 130
                  579**************************999999********************876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.3E-2675128IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.5E-2976127IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.0376127IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-2076132IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MDLTPAAPPT STTSPLPISS SINPLISKSP NSPSGTDNNP NLLPTHLHKS LSLSNGVRRR  60
LHHHPQEPPT MVVCSYKECL KNHAATMGGL ALDGCGEFFP SPNSSPLDPT SLKCAACGCH  120
RNFHRREPSS SAVVHHHYHP LPAIQWTNHN NNSSSPSTSP SPSSPAASPT PHHSIYPPPP  180
PSSAPHMLLE HAPPLKQNDP PPPAAAVPQR RRSWRAEF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011017078.15e-37PREDICTED: zinc-finger homeodomain protein 11-like
TrEMBLA0A067KYG42e-36A0A067KYG4_JATCU; Uncharacterized protein
TrEMBLB9S8W44e-36B9S8W4_RICCO; Transcription factor, putative
STRINGPOPTR_0010s17650.12e-32(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.15e-30homeobox protein 30